Error checking function for .(m)cool files — .checkCoolErrors • plotgardener

Error checking function for .(m)cool files

.checkCoolErrors(
  file,
  chrom,
  chromstart,
  chromend,
  zrange,
  altchrom,
  altchromstart,
  altchromend,
  norm,
  resolution
)

Arguments

file: Path to .(m)cool file
chrom: User-inputted chromosome
chromstart: User-inputted chromstart, can still be NULL at this point.
chromend: User-inputted chromend, can still be NULL at this point.
zrange: User-inputted zrange.
altchrom: User-inputted alt chromosome.
altchromstart: User-inputted alt chromstart.
altchromend: User-inputted alt chromend.
norm: User-inputted normalization.
resolution: Resolution, either user-inputted or determined by 'auto'.