Display the default genomic annotation packages associated with a genome build

Display the default genomic annotation packages associated with a genome build

defaultPackages(Genome)

Arguments

Genome

String indicating the name of the genome assembly.

Value

Returns a list of the default data packages for a genome build.

Examples

## View default genomic annotation packages associated with "hg19"
defaultPackages(Genome = "hg19")
#> 'data.frame':	1 obs. of  6 variables:
#>  $ Genome        : chr "hg19"
#>  $ TxDb          : chr "TxDb.Hsapiens.UCSC.hg19.knownGene"
#>  $ OrgDb         : chr "org.Hs.eg.db"
#>  $ gene.id.column: chr "ENTREZID"
#>  $ display.column: chr "SYMBOL"
#>  $ BSgenome      : chr "BSgenome.Hsapiens.UCSC.hg19"

## View default genomic annotation packages associated with "mm9"
defaultPackages(Genome = "mm9")
#> 'data.frame':	1 obs. of  6 variables:
#>  $ Genome        : chr "mm9"
#>  $ TxDb          : chr "TxDb.Mmusculus.UCSC.mm9.knownGene"
#>  $ OrgDb         : chr "org.Mm.eg.db"
#>  $ gene.id.column: chr "ENTREZID"
#>  $ display.column: chr "SYMBOL"
#>  $ BSgenome      : chr "BSgenome.Mmusculus.UCSC.mm9"